PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2300_p5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 349aa    MW: 38153 Da    PI: 8.0242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2300_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000242976152
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
                +r ++  rEr  R+++N+ f eL + l  +    ++   Ka++L +A++++k
  RrC2300_p5 29 KRINKAVRERLKREQLNDLFIELADSLELN----QQNSGKASVLCEATRFLK 76
                689999*********************997....344556667777766665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.23E-62677No hitNo description
SuperFamilySSF474592.49E-102792IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-72896IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.2872878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF579388.63E-6283339IPR001305Heat shock protein DnaJ, cysteine-rich domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031072Molecular Functionheat shock protein binding
GO:0046983Molecular Functionprotein dimerization activity
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGSKTPSTST HEANAPPVDE RSKKGKVPKR INKAVRERLK REQLNDLFIE LADSLELNQQ  60
NSGKASVLCE ATRFLKDVFG QIESLRKEHA SLLSESNYVT TEKNELKEET SVLETEISRL  120
QSEIEARVNQ SKPDLNASPA PEYHHHHHHY QQHAELASQF SGLPIFQGAA GFQQSSAAAP  180
PPPGSTVLVL PMQPDLQTQA PLMYNNNSSN KRNRNRDMAN SICFFSSPPP PTFCLLQSPG  240
KSVKPPLFFP IGDNKSEVFK TCKSKSFEIQ ATNGTQTPKV SSIVCQKCEG NGAVACSQCK  300
GGGVNLTDHF NGQFKAGGLC WLCRGKKEVL CGECNGAGFI GGFLSTFDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215KRNRNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150230.11e-120PREDICTED: transcription factor bHLH47-like
RefseqXP_013721659.11e-120PREDICTED: transcription factor bHLH47-like
SwissprotQ9SN745e-98BH047_ARATH; Transcription factor bHLH47
TrEMBLA0A078GAQ61e-121A0A078GAQ6_BRANA; BnaA06g20620D protein
STRINGBra019509.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117202331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-88bHLH family protein